Biological databases

• Bibliographic:
  
  
  
  
  
  • SeqAnalRef , sequence analysis bibliography, Expasy.
  • BIOBOB , Biocomputing biliography.
• Software:
  
  
  
  
  • The BioCatalog
  • Yellow BAGI
  • Archives for Biological Software and Databases Around the World .
  • MolBiology Software , List of software for molecular biology.
• Multi-databases browsers:
  
  
  
  
  
  • ACNUC .
  • SRSWWW ( Oslo , EBI )
  • NIH GenoBase .
• Protein sequences:
  
  
  
  
  
  • SWISS-PROT .
  • OWL .
  • PIR .
• Protein structures:
  
  
  
  
  
  • SCOP .
  • PDB (RCSB) .
• Nucleotide sequences:
  
  
  
  
  
  • EMBL , EBI.
  • GenBank , NCBI.
  • DDBJ , Japan.
• Transcription factors:
  
  
  
  
  • TRANSFAC
• Patterns/families:
  
  
  
  
  
  • PROSITE
  • Pfam
  • PRODOM .
  • BLOCKS .
  • PRINTS .
  • Domo .
  • ProtFam ( MIPS homepage ) .
  • SBASE , Segment BASE.
  • PROCLASS
• Structure based classifications:
  
  
  
  
  
  • Tree classification of PDB (by Alexandrov and Fischer using SARF2 ).
  • CATH Protein Structure Classification
  • SCOP Structural Classification of Proteins.
  • PDB chain clustering produced by Fischer et al.
• Misc.:
  
  
  
  
  • FlyBase
  • GeneCards
• Lists of databases:
  
  
  
  • LiMB (gopher).
  • BioDatabases List .