Online Visualization Tools
Online Programes
- Pratt - pattern discovery online
- Expression Profiler - online tool for expression profile clustering and sequence pattern discovery
- Database searches , EBI ( Fasta , Blitz ,...).
- Database searches at DISC (Japan) -- includes Fasta, BLAST, MPsrch and SRS Fasta
- Biologist's Control Panel (Baylor college of medicine).
- BCM Search Launcher searches, alignments.
- SAM , Sequence alignment and modeling system (using HMMs).
- Match sequence against PROSITE .
- AMAS Analysis of multiple alignments (Geoff Barton).
- MSA, Clustal W multiple sequence alignment.
- PredictProtein , Heidelberg.
- PSA , Protein Sequence Analysis: fits a structure model to your sequence.
- Sequence analysis tools , PDB, including multiple sequence alignment .
- MEME , motif discovery tool.
- Block Maker , at Fred Hutchinson Cancer Research Center.
- Bioinformation Search Center
- Longer list
Tools
- J-Express , a tool for analysing microarray gene expression data
- Clustal W , multiple sequence alignment
- Phylip , phylogenetic analysis.
- Pratt , pattern discovery.
- GCG , Wisconsin Sequence Analysis Package Program Manual.
- PROPHET , UNIX based software package for data analysis.
- RasMol , free program which displays molecular structures.
- MolScript , program for creating molecular graphics in the form of PostScript plot files.
- PairWise and SearchWise , Ewan Birney's excellent tools for sequence alignment and search.
- MEME , Multiple EM for Motif Elicitation
